Open PRIDE Inspector by clicking on the file in the tool's working directory -> Private Download -> ProteomeXchange -> PX reviewer account details. You can open the PRIDE XML and mzIdentML 'RESULT' files with PRIDE Inspector or just download all the files that you wish to investigate.
Changes in PeptideShaker 1.14.6 (December 21. 2016):
BUG FIX: Corrected a bug where the assumptions validation level was not set.
Changes in PeptideShaker 1.16.23 (May 8. 2018):
ICPLQuant
aligns multiple LC-MS(/MS) datasets in retention time by dynamic time warping [50]
FEATURE IMPROVEMENT: Updated the documentation of the peptide export.
FEATURE IMPROVEMENT: Better formatting of long lines in the waiting handler.
NEW FEATURE: Added the possibility to tune the protein inference.
The PRIDE Archive web site is available at Registered submitters can use their personal accounts or the reviewer accounts to access and download the individual PX datasets. For every submission there is a separate reviewer account generated.
Changes in PeptideShaker 0.29.0 (May 20. 2014)
FEATURE IMPROVEMENT: Added a check if the PRIDE XML file exists locally before downloading the file from the FTP server.
BUG FIX: Re-added the example dataset to the zip file.
FEATURE IMPROVEMENT: Minor speed improvements to the tag and peptide mapping.
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